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Telomerase Regulation by DNA Helicases

Regulating telomerase activity impacts DNA double-strand break (DSB) repair, as well as the length of telomeres at the ends of our chromosomes. The misregulation of telomere maintenance is also a hallmark of all cancers. However, despite its critical importance, the mechanism by which cells maintain a homeostatic telomere length and properly regulate telomerase activity remains ill defined. Using yeast genetics, we found that the Saccharomyces cerevisiae homolog of the human RECQL4 helicase, called Hrq1, acts as a telomerase inhibitor at both DSBs and telomeres. By investigating the mechanism biochemically, we discovered that Hrq1 acts synergistically with the Pif1 helicase to “tune” telomerase activity up and down. These data led to a model wherein the concerted activity of two helicases can stimulate or inhibit telomerase, as needed, at the level of individual telomeres during each cell cycle. Currently, we are further examining this interaction between Hrq1 and Pif1, as well as determining the roles of other helicases and telomere-binding proteins in the modulation of homeostatic telomere length.

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Hrq1 and Pif1 synergistically modulate in vitro telomerase activity. (Left) Alone, Pif1 both stimulates and inhibits telomerase activity in a concentration-dependent manner; high concentrations of Hrq1 slightly stimulate telomerase. However, the combined effect of both helicases dampens the telomerase stimulation displayed by Pif1 and enhances the inhibition. (Middle) Combining inactive Hrq1 with wild-type Pif1 yields a super-telomerase inhibitor. (Right) Combining inactive Pif1 with wild-type Hrq1 greatly stimulates telomerase activity. Thus, the activity of these helicases, likely controlled by PTMs in vivo (see Project 3), tunes telomerase activity to generate a homeostatic telomere length.

Pif1 Activity is Modulated by DNA Sequence and Structure. Nickens DG, Bochman ML. Biochemistry. 2022 Jan 4;61(1):10-20. doi: 10.1021/acs.biochem.1c00614. Epub 2021 Dec 21. PMID: 34932305

Characterization of the telomerase modulating activities of yeast DNA helicases. Nickens DG, Bochman ML. Methods Enzymol. 2021;661:327-342. doi: 10.1016/bs.mie.2021.08.005. Epub 2021 Sep 6. PMID: 34776218

The Biochemical Activities of the Saccharomyces cerevisiae Pif1 Helicase Are Regulated by Its N-Terminal Domain. Nickens DG, Sausen CW, Bochman ML. Genes (Basel). 2019 May 28;10(6):411. doi: 10.3390/genes10060411. PMID: 31142053 Free PMC article.

The Saccharomyces cerevisiae Hrq1 and Pif1 DNA helicases synergistically modulate telomerase activity in vitro. Nickens DG, Rogers CM, Bochman ML. J Biol Chem. 2018 Sep 14;293(37):14481-14496. doi: 10.1074/jbc.RA118.004092. Epub 2018 Aug 1. PMID: 30068549 Free PMC article.

The WYL Domain of the PIF1 Helicase from the Thermophilic Bacterium Thermotoga elfii is an Accessory Single-Stranded DNA Binding Module. Andis NM, Sausen CW, Alladin A, Bochman ML. Biochemistry. 2018 Feb 20;57(7):1108-1118. doi: 10.1021/acs.biochem.7b01233. Epub 2018 Jan 30. PMID: 29341597

Periodic DNA patrolling underlies diverse functions of Pif1 on R-loops and G-rich DNA. Zhou R, Zhang J, Bochman ML, Zakian VA, Ha T. Elife. 2014 Apr 29;3:e02190. doi: 10.7554/eLife.02190. PMID: 24843019 Free PMC article.

Pif1 family helicases suppress genome instability at G-quadruplex motifs. Paeschke K, Bochman ML, Garcia PD, Cejka P, Friedman KL, Kowalczykowski SC, Zakian VA. Nature. 2013 May 23;497(7450):458-62. doi: 10.1038/nature12149. Epub 2013 May 8. PMID: 23657261 Free PMC article.

The Pif1 family in prokaryotes: what are our helicases doing in your bacteria? Bochman ML, Judge CP, Zakian VA. Mol Biol Cell. 2011 Jun 15;22(12):1955-9. doi: 10.1091/mbc.E11-01-0045. PMID: 21670310 Free PMC article.

Unwinding the functions of the Pif1 family helicases. Bochman ML, Sabouri N, Zakian VA. DNA Repair (Amst). 2010 Mar 2;9(3):237-49. doi: 10.1016/j.dnarep.2010.01.008. Epub 2010 Jan 25. PMID: 20097624 Free PMC article. Review.